Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015946670.1_cds_XP_016488705.1_79312
CDS Infomation

[gene=LOC107808687] [db_xref=GeneID:107808687] [protein=E3 ubiquitin-protein ligase At1g63170-like] [protein_id=XP_016488705.1] [location=join(2849..3423,5777..5896,5974..6106,9075..9239,9343..9519)] [gbkey=CDS]
Sequence

ATGTCCACGGCAAGAGTCGCCGCCGATGATAACACTTCTAACGCCGACGTTAGCCCCAGC
AACGGCGGTGGCGGAGTTGATACGTCACCGCTTCTCACCAATTCCCGTAGCCAGCGTTCG
TTCCATCGCCGTCCGAGCCTCCGAGGAGCTGCCGGCTTTCTACGGCGCGCAAGCAGCCGC
CGGTTAATGCGCGAGCCATCGATGCGAGTTCGCGAAGCTGCCGCTGAGCAAATCGAGGAG
CGACAAAGCGACTGGGCGTACTCAAAACCTATAGTGATATTAGATCTCGTATGGAACTTA
GCTTTTGTTATTGTAGCTATCTCTGTTCTTATAATGAGCAAAAATGAGTCTCCTTCTATG
CCTTTAAGGCTTTGGATTATCGGATACGCTTTACAGTCTGTGCTTCACATGGTTTGTGTG
TTCGTCGAATATAGACGCCGATGTCAGCGACGGAATTCCTCAAGCAGCAGTGGAAATTGG
AATAATAGAGAAGTTTCGAACTTGAGTTCGGAAAGTGATGGAGGAGAGTCGGGTGATTAT
TTACTGGAGAGGCGTCAAAACGAGGACGAAACTAGTGTTGCCAAGCATCTGGAGTCCGCA
AACACCATGTTTTCTTTCATTTGGTGGATAATTGGGTTCTATTGGGTATCTGCTGGTGGC
CAAACTATGACCCGTGATGCACCTCAACTTTACTGGCTTTGTATCACGTTTCTGGCGTTT
GATGTGTTCTTTGTTGTTATATGTGTTGCTGTGGCTTGTGTCATCGGAATTGCTGTTTGC
TGCTGTCTCCCATGTATCATCGCAATCTTATATGCAGTGGCAGATCAGGAGGGAGCAACT
AAGGAAGATGTTGAAAGACTGACCAAATACAAGTTCCGGAGACTTGGTAACTTTGAGAAA
GAGAATGGCGAGATTCAAGAATCATTTGGAGGAGTAATGGTTGAATGCGACACTGATACA
CCTACTGAGCATGTTCTCCCACCGGAAGATGCTGAATGTTGCATTTGCATTTGTTCCTAT
GAAGATGGAGCTGAGCTGCGCGAGCTCCCTTGTCGTCACCATTTTCATGCAGCGTGCATA
GACAAGTGGTTGTATATAAATGCTACCTGTCCTCTTTGCAAGTTCAATATACTCAAAAAT
GGAAATCAAAGTGGCAGTGAAGAAGCATAA

Peptide Sequence

PEP ID

XP_016488705.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana tabacum]
Sequence

MSTARVAADDNTSNADVSPSNGGGGVDTSPLLTNSRSQRSFHRRPSLRGAAGFLRRASSR
RLMREPSMRVREAAAEQIEERQSDWAYSKPIVILDLVWNLAFVIVAISVLIMSKNESPSM
PLRLWIIGYALQSVLHMVCVFVEYRRRCQRRNSSSSSGNWNNREVSNLSSESDGGESGDY
LLERRQNEDETSVAKHLESANTMFSFIWWIIGFYWVSAGGQTMTRDAPQLYWLCITFLAF
DVFFVVICVAVACVIGIAVCCCLPCIIAILYAVADQEGATKEDVERLTKYKFRRLGNFEK
ENGEIQESFGGVMVECDTDTPTEHVLPPEDAECCICICSYEDGAELRELPCRHHFHAACI
DKWLYINATCPLCKFNILKNGNQSGSEEA

Transcript Sequence

Gene sequence data has not been registered.